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Modelling and simulation

This page contains all the videos that make up block 1 in the course.

Modelling formalism

Formulating ODEs from reactions

Dealing with different volumes in reaction based models

Lumped parameter models

Hodgkin Huxley type models

Other modelling formats

Simulation of models

Simulation of ODE models

Simulation of non ODE models

Properties of nonlinear dynamic systems

Local stability and fix points

Local bifurcations

Global and chaotic bifurcations